PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G470000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family LBD
Protein Properties Length: 260aa    MW: 26931.4 Da    PI: 8.1714
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G470000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.11.7e-39331331100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p  +r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l
  Seita.9G470000.1.p  33 PCGACKFLRRKCVSGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLQIPAYKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNL 123
                         7***********************9989*************************************************************** PP

              DUF260  91 kaelallkee 100
                         +ael +l+++
  Seita.9G470000.1.p 124 QAELTYLQAH 133
                         *****99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.90432134IPR004883Lateral organ boundaries, LOB
PfamPF031955.1E-3933131IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MSAGGGTSTL GGGGPSGSGG GGSGGPGGSG GGPCGACKFL RRKCVSGCIF APYFDSEQGA  60
AHFAAVHKVF GASNVSKLLL QIPAYKRLDA VVTICYEAQA RLRDPVYGCV AHIFALQQQV  120
VNLQAELTYL QAHLATLELP SPPPLPAPPQ MPMPGPFSIS DLPSSTNVPT TVDLSALFDP  180
PPQPPQWAVQ QQHHHHQHQQ QHQLRQPTPY AAPVRGGSGV AESSGGGGDL QALARELLDR  240
HRSGGVKLEH PPPPPPHSR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00314DAPTransfer from AT2G45420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0614310.0BT061431.1 Zea mays full-length cDNA clone ZM_BFb0145J09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985011.10.0PREDICTED: LOB domain-containing protein 30-like
SwissprotO221316e-72LBD18_ARATH; LOB domain-containing protein 18
TrEMBLC5WQY61e-109C5WQY6_SORBI; Putative uncharacterized protein Sb01g041130
STRINGSb01g041130.11e-108(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33463782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.16e-67LOB domain-containing protein 18